Microbial community development and unseen diversity recovery in inoculated sterile soil

Soil is considered as one of the most biodiverse environments on Earth; yet, the taxonomy, occurrence, and role of its different microbial populations are largely unknown. Here, two sterilized soils (from England and Italy) were inoculated with a subsample of their initial microbial communities and/or those from the other soil to study their microbial community evolution. This approach compared two driving factors (original community and soil physico-chemical characteristics) for microbial community definition. After 2 months of incubation and based on metagenomic datasets, the two inoculated communities (from an English grassland and an Italian forest) possessed similar functional and taxonomical structures when inoculated in the same sterile soil. For example, the newly colonized Italian soil was dominated by Actinobacteria related organisms (>66 % of the detected community) with a functional distribution independent of the inoculated soil origin. In addition, some of the organisms that dominated the different inoculated communities after 2 months were similar for a given sterile soil whether they came from the English grassland or the Italian forest, and they had not been detected in the original microbial community from either soil. Thus, similar microorganisms with low representation from the two distinct communities emerged in each sterilized soil, thus increasing the microbial diversity recovered from the microbial community of the donor soil. So far, these observations support the idea that different temperate soil microbial communities have different evenness due to environmental physico-chemical variations, yet have similar community composition (richness), and thus develop similarly when colonizing the same habitat.     

Changes of pore morphology, infiltration and earthworm community in a loamy soil under different agricultural managements

Earthworm activity produces changes at different scales of soil porosity, including the mesoporosity (between 1.000 and 30 μm eq. dia.) where both water retention and near-saturated infiltration take place. At this scale, the structural changes are poorly described in temperate agricultural systems, so we do not yet fully understand how these changes occur. The present study was conducted to determine the relationships between the morphology of the mesopores, which is mainly affected by earthworm activity, and the hydrodynamic behaviour (near-saturated infiltration) of topsoil under different agricultural managements inducing a large range of earthworm populations.Investigations were carried out at the soil surface in three fields under different management practices giving rise to three different earthworm populations: a continuous maize field where pig slurry was applied, a rye-grass/maize rotation (3/1 year, respectively) also with pig slurry, and an old pasture sown with white clover and rye-grass.Pore space was quantified using a morphological approach and 2D image analysis. Undisturbed soil samples were impregnated with polyester resin containing fluorescent pigment. The images were taken under UV light, yielding a spatial resolution of 42 μm pixel⁻¹. Pores were classified according to their size (which is a function of their area) and their shape. Hydraulic conductivity K(h) was measured using a disc infiltrometer at four water potentials: −0.05, −0.2, −0.6, and −1.5 kPa. The abundance and ecological categories groups of earthworms were also investigated.Continuous soil tillage causes a decrease in both abundance and functional diversity (cf. maize compared with old pasture) when soil tillage every 4 years causes only a decrease in abundance (cf. rotation compared with old pasture). There were no relationships between total porosity and effective porosity at h=−0.05 kPa. Image analysis was useful in distinguishing the functional difference between the three managements. Fewer roots and anecic earthworms resulted in fewer effective tubular voids under maize. There were fewer packing voids in the old pasture due to cattle trampling. Greater hydraulic conductivity in the pasture phase of rotation may arise from a greater functional diversity than in the maize and absence of cattle trampling compared with the pasture. We point to some significant differences between the three types of agricultural management.A better understanding is required of the influence of agricultural management systems on pore morphology. This study provides a new methodology in which we consider the earthworm activity as well as community in order to assess the effects of agricultural management on soil structure and water movement.     

IMAGING DIAGNOSIS—AORTIC ANEURYSM AND URETERAL OBSTRUCTION SECONDARY TO UMBILICAL ARTERY ABSCESSATION IN A 5‐WEEK‐OLD FOAL

A 5‐week‐old foal was evaluated for fever and hematuria of 3 days duration. Cystoscopy localized the blood to be originating from the left ureter. Abdominal ultrasonography revealed left hydronephrosis, hydroureter, and omphaloarteritis of the left umbilical artery with abscess formation that communicated with an arterial structure. Computed tomography (CT) revealed a large aortic aneurysm within the center of the abscess. An exploratory celiotomy was performed and the infection was nonresectable. The prognosis for life was grave; therefore the colt was euthanized. Necropsy findings confirmed the antemortem diagnosis. Ultrasound and CT imaging in this case provided an accurate antemortem diagnosis.     

Factors controlling nitrate concentrations in surface waters of an artificially drained agricultural watershed

Land managers need to clearly identify the main natural factors controlling nitrate attenuation from upstream to downstream in agricultural watersheds. All interfaces between surface waters and groundwaters such as riparian zones could be identified as retention zones in the watershed. However, in highly human-influenced agricultural landscapes, retention zones could be shortcut, abandoned and sometimes erased. Starting from this situation, this paper aims to underline the role of hydrological and biogeochemical retention processes in the determination of nitrate concentration in an artificially drained agricultural watershed. The Orgeval watershed (East part of Paris, France, belonging to a long-term environmental observatory network) is 80 % covered by drained agricultural plots, 17 % forest and 3 % urban areas and roads, covering a surface area of 104 km². The watershed is split into several nested sub-basins from 1 to 100 km². Two levels of monitoring were carried out in the 2007–2008 hydrological year: long-term at six monitoring stations (measuring nitrate concentration and discharge) and 20 points throughout the watershed (measuring discharge, chloride, nitrate, sulphate, calcium concentration and nitrogen isotopic composition) for three different dates (10/18/2007, 01/23/2008, 04/10/2008). Artificial drainage generates modified water transfer and thus nitrate transformation processes during the wet drainage season in winter. Dilution processes provided by forested areas seem to be one of the main factor determining global water quality. A threshold of 34 % forested cover maintains the nitrate concentration below the drinking-water limit (11.3 mgN L^?1). Nevertheless, statistical analysis, isotopic measurements and the analysis of the nitrate versus chloride ratio showed that retention processes also influence water quality during the dry season.     

Assessing the effects of subtropical forest fragmentation on leaf nitrogen distribution using remote sensing data

Subtropical forest loss resulting from conversion of forest to other land-cover types such as grassland, secondary forest, subsistence crop farms and small forest patches affects leaf nitrogen (N) stocks in the landscape. This study explores the utility of new remote sensing tools to model the spatial distribution of leaf N concentration in a forested landscape undergoing deforestation in KwaZulu-Natal, South Africa. Leaf N was mapped using models developed from RapidEye imagery; a relatively new space-borne multispectral sensor. RapidEye consists of five spectral bands in the visible to near infra-red (NIR) and has a spatial resolution of 5 m. MERIS terrestrial chlorophyll index derived from the RapidEye explained 50 % of the variance in leaf N across different land-cover types with a model standard error of prediction of 29 % (i.e. of the observed mean leaf N) when assessed on an independent test data. The results showed that indigenous forest fragmentation leads to significant losses in leaf N as most of the land-cover types (e.g. grasslands and subsistence farmlands) resulting from forest degradation showed lower leaf N when compared to the original indigenous forest. Further analysis of the spatial variation of leaf N revealed an autocorrelation distance of about 50 m for leaf N in the fragmented landscape, a scale corresponding to the average dimension of subsistence fields (2,781 m²) in the region. The availability of new multispectral sensors such as RapidEye thus, moves remote sensing closer to widespread monitoring of the effect of tropical forest degradation on leaf N distribution.     

Formulated Feeds Containing Fresh or Dried Artemia as Food Supplement for Larval Rearing of Black Tiger Shrimp,Penaeus monodon

Supplementation of microalgae and Artemia nauplii with practical formulated feeds containing fresh or dried Artemia biomass for larval rearing of black tiger shrimp, Penaeus monodon, was assessed. Five feeding treatments were carried out in a recirculating seawater system with fifteen 30-L fiberglass tanks. Shrimp nauplii were stocked at a density of 150 L^?1 for 23 days. In the control treatment, live feed was supplemented with commercial formulated feed (Inve Aquaculture NV, Belgium). In two other treatments, live feed was supplemented with a pelleted feed based on either fresh or dried Artemia. In the remaining two treatments live feed was supplemented with a combination of 50% commercial feed and 50% fresh or dried Artemia feeds. Overall, performance of PL in the combination treatments (commercial feed and Artemia diets) were equal to or better than those fed commercial feed alone as seen by the better growth rate and higher resistance to formalin stress. The results indicate that feed containing fresh or dried Artemia biomass can partially supplement live feeds for larval rearing of P. monodon.     

Using summed individual species models and state-of-the-art modelling techniques to identify threatened plant species hotspots

Reliable identification of hotspot areas with high numbers of threatened plant species has a central role in conservation planning. We investigated the potentiality of identifying the distribution, richness and hotspots of threatened plant species at a 25 ha resolution using eight state-of-the-art modelling techniques (GLM, GAM, MARS, ANN, CTA, GBM, MDA and RF) in a taiga landscape in north-eastern Finland. First, the individual species models developed based on occurrence records of 28 species in the 1677 grid squares and derived from different statistical techniques were extrapolated to the whole study area of 41 750 km². Second, the projected presence/absence maps were then combined to create species richness maps, and the top 5% of grid cells ranked by species richness were classified as hotspots. Finally, we created an overall summary map by combining the individual hotspot maps from all eight modelling techniques and identified areas where the individual hotspots maps overlapped most. There were distinguishing differences in projections of the geographic patterns of species richness and hotspots between the modelling techniques. Most of the modelling techniques predicted several hotspot locations sporadically around the study area. However, the overall summary map showed the highest predictive performance based on Kappa statistics, indicating that the locations where the hotspot maps from the eight models coincided most harboured highest observed species richness. Moreover, the summary map filtered out the patchy structures of individual hotspot maps. The results show that the choice of modelling technique may affect the accuracy and prediction of hotspot patterns. Such differences may hamper the development of useful biodiversity model applications for conservation planning, and thus it is beneficial if the conservation decision-making can be based on sets of alternative maps and overlaying of predictions from multiple models.     

Effects of an endogeic and an anecic earthworm on the competition between four annual plants and their relative fecundity

Competition between plants for essential resources determines the distribution of biomasses between species as well as the composition of plant communities through effects on species reproductive potentials. Soil organisms influence plant competitive ability and access to resources; thus they should modify plant community composition. The effects of an endogeic (Aporrectodea caliginosa) and an anecic (Lumbricus terrestris) earthworm species on the competition between grass (Poa annua), two forbs (Veronica persica and Cerastium glomeratum) and legume (Trifolium dubium) were investigated in a greenhouse experiment. We established two types of plant communities: monocultures and polycultures of the four species. L. terrestris increased the biomass of P. annua and V. persica (in monocultures as well as in polycultures). However, the presence of L. terrestris allowed the grass to produce the highest biomass in polycultures suggesting that this earthworm species promoted the growth of P. annua against the other plant species. In monocultures as well as in polycultures, the presence of L. terrestris to increased the number of seeds of T. dubium and the total seed mass of V. persica. These results suggest that L. terrestris enhanced the short term competitive ability of P. annua by promoting its growth. The increased number of seeds of T. dubium in the presence of L. terrestris suggests that this earthworm species could enhance the long-term competitive ability of this legume and may increase its number of individuals after several generations.     

Effects of ramipril on renal function during progressive overpacing-induced heart failure in dogs

OBJECTIVE: To investigate the effects of preventive angiotensin converting enzyme inhibitor treatment with ramipril in dogs with progressively severe experimentally induced heart failure. ANIMALS: 20 dogs. PROCEDURES: Dogs were randomly allocated to receive no treatment (control) or ramipril (0.125 mg/kg, PO, daily) for 7 weeks. Physical examination, repetitive catheterization of the right side of the heart, and echocardiography were performed before the study (day 0) and weekly for 7 weeks. Renal plasma flow (RPF) as determined by para-aminohippuric acid clearance and glomerular filtration rate (GFR) as determined by creatinine and iohexol clearances were measured on day 0 and at weeks 4 and 7. RESULTS: Overpacing induced a progressive increase in right atrial pressure (RAP) and pulmonary artery pressure, occluded (PAPO), with a decrease in systemic arterial pressure. There were progressive alterations of echocardiographic indices of diastolic and systolic ventricular function. The RPF and GFR decreased before cardiac output decreased, and filtration fraction increased. The logarithm of the urinary sodium-to-potassium concentration ratio (log(10)[Na(+)/K(+)]) decreased. Significant effects of ramipril included a delay in clinical signs of heart failure, a late decrease in RAP and PAPO, and increases in the sodium excretion fraction and log(10)(Na(+)/K(+)). There was a satisfactory agreement between the creatinine and iohexol clearance measurements. Conclusions AND CLINICAL RELEVANCE: Results suggest that, in this rapid-evolving, dilated cardiomyopathy, activation of the renin-angiotensin system contributes to the pathophysiology of heart failure late in the disease and essentially by an activation of renal salt and water retention.